FastQCFastQC Report
Sun 21 May 2023
EGAF00007943256

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943256
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497234
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45620.9174754743239601No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA43310.8710184741992705No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30140.6061532397221429No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA23100.4645700012468978No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20430.410872949154724No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19740.3969961828837127No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17580.353555871078808No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15990.32157897488908643No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14220.2859820527156228No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13860.2787420007481387No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT13550.2725075115539163No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13290.2672785851329555No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT12380.24897734265959284No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11590.23308945084205826No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10950.22021824734430873No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC8550.1719512342277479No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA8330.1675267580253965No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8140.1637056194870021No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7930.15948225583930303No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7800.15686779262882267No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC7780.15646556751951798No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG7670.15425332941834227No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7340.14761661511481516No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7150.14379547657642078No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6930.13937100037406935No Hit
ATGGGTTCCATTTTCAAACCGAAAATGCCAC5830.11724861936231232No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC5760.11584083147974594No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5590.11242191805065622No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5380.10819855440295716No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC5220.10498075352851977No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5210.10477964097386744No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT4990.10035516477151603No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)