FastQCFastQC Report
Sun 21 May 2023
EGAF00007943257

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943257
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498963
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23980.4805967576754188No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA20610.41305667955339376No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18470.3701677278675974No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT17020.34110745686553917No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16240.3254750352230526No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16210.32487378823680313No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15770.3160554991051441No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12840.25733371011477807No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11140.22326304756064078No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11050.22145930660189234No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10490.21023602952523535No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8830.1769670296194307No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8630.1729587163777675No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8490.17015289710860323No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8450.16935123446027062No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7570.15171465619695249No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7470.14971049957612087No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7240.1451009393482082No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6940.13908846948571335No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6770.13568140323029965No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6340.12706352976072374No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6190.12405729482947633No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5820.1166419153323994No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT5660.11343526473906883No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5520.11062944546990458No Hit
GCCACGGCTCAGCTGAGAGCGGATTTTACGGTACTGGCCAGAAC5370.10762321053865717No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5100.10221198766241185No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)