FastQCFastQC Report
Wed 31 May 2023
EGAF00007943258

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943258
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498963
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA36300.7275088533618725No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC33750.6764028595306666No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA21880.43850946863795515No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18270.36615941462593415No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18150.36375442668093627No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17930.35934528211510675No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17800.35673987850802563No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17200.34471493878303605No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12260.24570960171395473No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12120.24290378244479052No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10460.20963478253898585No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9340.18718822838567187No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9130.18297949948192552No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9060.1815765898473434No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9020.18077492719901075No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8880.1779691079298465No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8380.16794832482568847No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7910.15852878870777992No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7430.14890883692778822No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7280.14590260199654081No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6780.13588181889238282No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6620.13267516829905224No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6380.1278651924090564No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6130.12285480085697736No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5990.12004898158781312No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC5760.11543942135990043No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5630.11283401775281936No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5410.10842487318698982No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5360.10742279487657401No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5350.10722237921449085No Hit
GTTCTGGTTAACGAAGGTAACGGTTATGTGG5260.10541863825574241No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)