FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943262

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943262
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510240
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA36720.7196613358419568No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29990.5877626215114456No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG22230.4356773283160866No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20570.40314361868924425No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18730.3670821574161179No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17180.33670429601756036No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16830.3298447789275635No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16200.31749764816556914No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15380.30142677955471936No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12040.23596738789589214No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11270.22087645029789904No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10110.1981420507996237No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9740.19089056130448417No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9670.18951865788648478No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9420.1846190028222013No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC9210.1805032925682032No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG9210.1805032925682032No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA9070.17775948573220446No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9010.17658356851677642No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8390.16443242395735339No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7660.15012543116964566No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7560.14816556914393225No Hit
GGTATGGATGAACCACCGTCTGGTTGGGAAC7130.13973816243336468No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7060.13836625901536534No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7030.1377783004076513No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG6800.1332706177485105No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6730.13189871433051112No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6710.13150674192536846No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC6610.12954687989965508No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG6460.12660708686108496No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6450.12641110065851363No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6440.1262151144559423No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6370.12484321103794294No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6070.11896362496080276No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5910.11582784571966134No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC5800.1136719974913766No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5560.10896832862966448No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5480.10740043900909375No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5440.10661649419880839No Hit
CCGGAAAAACTGCCGAAAACTATCGAGAAAC5430.10642050799623706No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)