FastQCFastQC Report
Sun 21 May 2023
EGAF00007943265

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943265
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467789
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17080.36512188187409284No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG10580.22617034603207858No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10080.21548176635192365No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC9680.20693090260779967No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8770.18747768758991767No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7960.17016218850806666No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7230.15455686217504047No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC5820.12441506747700352No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4700.10047264899345645No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)