FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943266

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943266
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467789
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41910.8959167487905872No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16550.35379198741312856No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10860.23215595065296532No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC10520.22488771647045996No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9380.20051775479970668No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8990.19218066264918585No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7870.16823824416563876No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7230.15455686217504047No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6820.1457922268373134No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5920.1265527834130345No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5280.11287140142243618No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4840.10346545130389984No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4680.10004510580625026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)