FastQCFastQC Report
Sun 21 May 2023
EGAF00007943268

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943268
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479374
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44780.9341349343101629No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32150.670666327335233No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25230.5263113977812731No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15310.31937485136865995No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9400.19608906615711325No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8010.16709291701260393No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7970.16625849545448856No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7770.1620863876639117No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7770.1620863876639117No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7740.16146057149532517No Hit
GAGAAACCGTACGATCCGTTCGACCGCAGCC7600.15854009604192135No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7540.15728846370474828No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7340.1531163559141714No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA6930.14456353494348878No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6910.14414632416443113No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6740.14060003254244077No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6150.12829231456023898No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6060.12641486605447938No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5180.10805759177594113No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)