FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943270

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943270
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491235
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21200.4315653404175191No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11860.24143230836564983No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10110.20580781092552441No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8200.16692621657658757No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7080.1441265382149073No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5510.11216627479719483No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4960.10097000417315541No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)