FastQCFastQC Report
Wed 31 May 2023
EGAF00007943275

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943275
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470861
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13980.2969029076521521No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10710.22745566101248565No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8870.1883783112213583No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8840.18774118051824212No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8010.17011389773202706No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7110.1509999766385409No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT6300.13379744765440332No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6270.1331603169512871No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6160.13082417103986102No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5680.1206300797900017No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5530.11744442627442067No Hit
TGGATCGTTCAGGTCACGGATAGTGGCCTTGGACGTAGCCGGAG5340.11340926515468472No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5250.1114978730453361No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5170.10979885783702621No Hit
CGCACGCAGGCCGCTTGCGACGTTAGTGATGGCCTTATTACCCG4970.10555131981625152No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)