FastQCFastQC Report
Sun 21 May 2023
EGAF00007943276

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943276
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470861
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA19300.4098874190047594No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13900.2952038924438422No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11710.24869335111635918No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11610.24656958210597185No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10720.22766803791352436No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8260.17542332025799545No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8080.17160053603929823No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7440.15800841437281915No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7380.15673415296658674No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6330.1344345783575195No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG6300.13379744765440332No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6280.13337269385232584No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG5810.12339097950350528No Hit
GTTGAAACCCCGCAGCCGACCGCTGTATCCG5460.11595778796714953No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5340.11340926515468472No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5190.11022361163910369No Hit
CTGACTTCTATTACTCTGGGCGGTACCACCA5170.10979885783702621No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)