FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943278

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943278
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514105
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACGCACTGACGGAAGGTCTGTCCGATGAAC20960.407698816389648No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG17120.3330059034633003No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16730.3254199044942181No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15170.29507590861788935No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13860.26959473259353633No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12660.24625319730405265No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11780.229136071425098No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11200.2178543293685142No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10650.20715612569416753No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10420.20268233143034983No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8080.1571663376158567No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7490.14569008276519388No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7290.14179982688361328No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC7170.1394656733546649No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7020.13654798144347946No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6960.13538090467900527No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6900.13421382791453107No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6520.12682234173952792No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6180.12020890674084089No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5980.11631865085926026No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5560.10814911350794099No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5170.1005631145388588No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)