FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943282

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943282
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498382
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46520.9334205488962282No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22400.4494544345502045No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20220.40571288690201496No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15720.315420701389697No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12120.2431869529798428No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11120.22312202286599436No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG11090.22252007496257892No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8950.1795811245189433No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8830.17717333290528148No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8510.17075255526885No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8200.164532426933557No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7970.15991749300737187No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6400.12841555272862987No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6050.1213928271887829No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT5550.1113603621318587No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)