FastQCFastQC Report
Sun 21 May 2023
EGAF00007943283

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943283
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460231
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA33290.7233324135053919No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG31300.6800932575163342No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA30360.6596687315717542No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18700.40631769698260223No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15180.3298343657858771No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13220.2872470563695188No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT12630.2744274071064313No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12470.2709508920520347No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG11960.2598695003161456No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9910.2153266511816892No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9420.2046798238275996No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8950.1944675608553096No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG8850.19229473894631174No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8300.18034421844682344No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7610.16535174727473811No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT7340.15948512812044385No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7290.15839871716594492No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7170.1557913308751475No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7100.15427035553884896No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6700.14557906790285746No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6540.14210255284846088No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6540.14210255284846088No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6110.13275941863977003No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGCAGT5660.1229817200492796No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5060.10994478859529236No Hit
GTCCAGGTGCATGGTGTCACGGATTTTCTGGTACACGGCAGAAG4880.1060337091590962No Hit
CATGCATTTCGGACGACCCAGTGCCACGTCCAGATCGGTACAGT4740.10299175848649918No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4670.10147078315020067No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC4620.10038437219570173No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)