FastQCFastQC Report
Wed 31 May 2023
EGAF00007943284

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943284
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460231
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT71631.5563923334151761No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42850.9310541880055885No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC33530.7285471860869868No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31360.6813969506617329No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18190.3952363052467131No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14780.3211430781498856No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13430.2918099823784143No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT12650.2748619714882309No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12470.2709508920520347No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11980.2603040646979452No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11780.2559584208799494No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11680.25378559897095154No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC11630.2526991880164526No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9300.20207243753680215No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8160.17730226777422642No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG7900.17165293081083194No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7760.16861098013823492No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6840.14862101857545448No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6700.14557906790285746No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTA5540.12037433375848217No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4880.1060337091590962No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4820.10473001601369748No Hit
GGCACTCTGGATCAGACCAACGGTCTGTTCG4760.10342632286829874No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA4640.1008189365775013No Hit
ACCCAGGGTGAAGTTAACGTAACTGGCGTTA4610.10016709000480192No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)