FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943286

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943286
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477817
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA34610.7243358859144818No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26020.544559946590431No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23760.497261503881193No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15950.33380980584617126No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13910.29111563632101833No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10900.2281208077569446No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9450.19777446177092906No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8910.18647306395544738No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7190.15047601906169097No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6340.13268678175954393No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6230.13038464516750137No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6130.12829179372018995No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5790.12117609879933111No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5670.11866467706255741No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4990.10443328722083978No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG4950.10359614664191522No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC4950.10359614664191522No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)