FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943287

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943287
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439585
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG22200.5050217819079359No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG19930.4533821672714037No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG17260.3926430610689628No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16160.36761945926271367No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15740.35806499311850953No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG12500.2843591114346486No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG12050.27412218342300126No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT11400.2593355096283995No Hit
TTCAACGACAGCAGCAGAGTGCAGCACACCACGCAGCGGCAGGC10930.24864360703845673No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA9720.22111764505158274No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA9110.2072409204135719No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8630.1963215305344814No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA7740.17607516180033442No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC7080.16106100071658497No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT6420.14604683963283552No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG5190.1180659030676661No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5150.11715595391107521No Hit
CTGAGACAGGGAGGCAGCTTCCAGTGCACGCAGGGTAGCCAGCA5130.11670097933277979No Hit
GATGCGATGCGGGGAGTCGCAGATACGACCGGTAGAGCTGGACT4950.11260620812812085No Hit
AGATTCAACATCCGTTTCGCTACCGTTGAAGTGCATGTAGGTGG4890.11124128439323454No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT4590.10441666571880297No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4550.10350671656221208No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC4470.10168681824903035No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG4460.10145933095988262No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)