FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943288

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943288
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439585
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACGCACTGACGGAAGGTCTGTCCGATGAAC24940.5673532991344109No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG23060.5245856887746397No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG22930.5216283540157194No Hit
ATGTCCAACATGGACATCGATGGTATTAACA19950.45383714184969914No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16060.3653445863712365No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15840.3603398660099867No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC14020.31893717938510185No Hit
AAAGCACGTCAGACTATCGAAGGCCTGCGCG11420.2597904842066949No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA11260.2561506875803315No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9490.21588543740118524No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT9420.2142930263771512No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7930.18039742029414108No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7640.1738002889088572No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7550.17175290330652776No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7350.16720315752357337No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT7070.16083351342743724No Hit
ATGTTCGAGGAACCGGAATGGGCTGAAGCGG6420.14604683963283552No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5680.12921278023590432No Hit
TACGACGACTTCCATACCGATGAAGATAAAC5420.12329811071806362No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5260.11965831409170014No Hit
CTGGAAGAGGTCATCGTAGAAAAAACCAAAC5050.11488108101959803No Hit
GGTAACGATAATTCTACTGCAACTCTGTGTC5030.11442610644130258No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG4890.11124128439323454No Hit
CTGGGCCATCACGCAGTGCCGAACGGTACCC4790.10896641150175733No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4570.10396169114050753No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4500.10236928011647349No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC4470.10168681824903035No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)