FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943290

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943290
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480371
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44600.9284490529195144No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA34220.7123660670606676No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16960.35306044702948347No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16890.35160323999575327No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15250.3174629609197891No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9800.20400898472222512No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9490.19755563928713435No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6320.13156497790249622No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6150.12802604653486577No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5560.11574387296485425No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5560.11574387296485425No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5540.1153275280980742No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5170.10762514806264324No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5050.10512707886196294No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4980.10366987182823277No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)