FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007943294

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943294
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422721
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43751.0349615940537613No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22160.5242228325538594No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16440.38890899671414475No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12490.2954667499367195No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12120.28671393188415056No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG11230.26565985602797115No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7520.1778951128522122No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5950.14075477679131154No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5770.13649664909006176No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT5510.13034602018825656No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG4970.11757163708450728No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)