FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943296

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943296
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455315
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTACGTCGAACCGACTGCAGTTGCTACTC18500.4063121135916893No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12350.2712407893436412No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12170.26728748229247884No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11290.24796020337568497No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8800.19327278916793866No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8250.1811932398449425No Hit
GACATGCCATCCTCTGACTTCGACCCGTACG7370.16186596092814864No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7360.16164633275863963No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6880.1511041806222066No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6830.1500060397746615No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6690.1469312454015352No Hit
ACCTACCTGACGCAGGTACCGCCGGAACGTG6490.14253868201135478No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6030.1324357862139398No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5910.12980024817983155No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5860.12870210733228643No Hit
ACTACTACCACTCGTCGTCCGACCAAAAAAC5840.1282628509932684No Hit
GAAAAACAGCGTAAACAAAAAGATCTGATTA5770.12672545380670525No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)