FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943297

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943297
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440636
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9120.20697355640483303No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8750.19857660291033868No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4930.11188373169691082No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4870.1105220635626685No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)