FastQCFastQC Report
Wed 31 May 2023
EGAF00007943298

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943298
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440636
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9180.20833522453907535No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8990.20402327544730797No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8470.19222215161720785No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7440.168846848646048No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6290.14274820940640345No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5350.12141540863660708No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5100.1157417914105974No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5030.1141531785873147No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)