FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943299

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943299
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences531762
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13920.2617712435262392No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG8720.16398313531241418No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT6890.1295692433833181No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG6620.12449178391836949No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6350.1194143244534209No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5930.11151605417461195No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)