FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943303

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943303
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482633
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT29640.6141312342918948No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG21390.4431938968118633No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21160.43842837103969273No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG17560.36383753286658804No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT16530.342496265278172No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG15590.3230197686440836No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG15570.3226053750986774No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT11950.24760014338016673No Hit
GGTAGTGTTGTCGCCGGTGATACCGGACGTAGAGCTGCTGCCGA10420.21589903715659725No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT9490.19662973729521188No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9010.1866842922054646No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8200.16990135361651607No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7580.15705515370892584No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7410.1535328085729737No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC7260.15042485698242763No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG6330.13115555712104227No Hit
GTTGCGTGGGCCGGTCGGCAGGGTATCTGCTACACGAGCTACCG6210.12866919584860545No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG6130.12701162166698093No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5200.10774232180559555No Hit
GCTTTTGGCTACCGGCTGGGTGTTATTCGTGGTAGCGGATTGGT5120.10608474762397102No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4930.10214800894261271No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)