FastQCFastQC Report
Wed 31 May 2023
EGAF00007943304

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943304
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482633
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA31110.6445891598792457No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG21760.4508601774018768No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21030.4357348129945528No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG18420.38165645531905196No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17950.37191820700200773No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG16940.35099133295899787No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA16280.33731634596059534No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG15690.32509173637111427No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC13440.2784724625129239No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13230.2741213302861594No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC10630.22025016938336167No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG9480.19642254052250882No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG8840.18316194706951244No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8290.17176612457084367No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8180.16948696007110992No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC7140.14793849570999082No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6920.1433801667105233No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6750.13985782157457116No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6510.1348850990296975No Hit
GTTGTTCCGCCGGGTGCCCCGGCAACTTGCG6350.13156995066644842No Hit
ACCCAGGTTTACCAGGACCCAGCAATCGTAC5310.1100214863053293No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG4860.10069763153369123No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA4840.1002832379882851No Hit

[OK]Adapter Content

Adapter graph