FastQCFastQC Report
Sun 21 May 2023
EGAF00007943305

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943305
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463725
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7300.15742088522292308No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6840.14750121300339641No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6320.13628767049436627No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6130.13219041457760525No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5780.12464283788883497No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5550.11968300177907165No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4730.10200010782252411No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4720.10178446277427354No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4700.1013531726777724No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4680.10092188258127123No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4680.10092188258127123No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4650.10027494743651949No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)