FastQCFastQC Report
Wed 31 May 2023
EGAF00007943306

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943306
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463725
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12480.26912502021672324No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7770.1675562024907003No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7640.16475281686344276No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6940.1496576634859022No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6360.1371502506873686No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6240.13456251010836162No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5880.12679928837134077No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5710.12313332255108093No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5580.12032993692382339No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5550.11968300177907165No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5420.11687961615181411No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5310.11450752062105775No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4830.10415655830502991No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4730.10200010782252411No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4710.10156881772602297No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)