FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943307

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943307
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439953
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6440.14637927233136266No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6150.13978765913631686No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6040.13728739206233392No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5700.1295592938336595No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5690.12933199682693378No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5080.11546687941666495No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4990.1134212063561335No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4840.1100117512552477No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4820.1095571572417963No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4600.10455662309383049No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4510.102510950033299No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)