FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943308

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943308
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439953
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36400.8273611044816152No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7070.16069898375508293No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7010.15933520171472862No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6130.1393330651228654No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5860.133196045941271No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5730.13024118485383665No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5610.12751362077312803No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5470.12433146267896797No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5230.11887633451755074No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5060.11501228540321354No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4950.11251201832923063No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4750.10796607819471625No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4740.10773878118799053No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4710.10705689016781339No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4540.10319284105347616No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)