FastQCFastQC Report
Wed 31 May 2023
EGAF00007943310

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943310
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498199
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA41830.8396243268252245No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18500.37133755788349637No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18450.3703339428621896No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18340.36812598981531475No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17380.3488565814062252No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14000.28101220596588916No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13810.2771984688849235No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13230.26555653463776524No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9670.19409914512072485No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC9250.18566877894174819No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8930.179245642805385No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8930.179245642805385No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8590.17242106066049911No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC7120.14291477903408076No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6220.12484970865055932No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6170.12384609362925257No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6140.1232439246164685No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6130.12304320161220716No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC5160.10357307019885628No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5040.10116439414772009No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)