FastQCFastQC Report
Sun 21 May 2023
EGAF00007943316

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943316
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459375
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40240.8759727891156464No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19520.4249251700680272No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12420.2703673469387755No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11110.24185034013605444No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8950.1948299319727891No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8710.18960544217687075No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8170.1778503401360544No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA7030.15303401360544217No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6740.14672108843537415No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5170.11254421768707483No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5050.10993197278911565No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)