FastQCFastQC Report
Sun 21 May 2023
EGAF00007943319

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943319
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences414038
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18840.4550306976654317No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15830.38233205647790786No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9220.22268487433520595No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8640.2086764982924273No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5880.14201595022679078No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5520.13332109613127296No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4610.11134243716760298No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4470.10796110501934605No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)