FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007943320

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943320
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences414038
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37390.9030572073094741No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35600.8598244605567604No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9030.21809592356257157No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9000.21737135238794505No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5900.14249899767654176No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5580.13477023848052594No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4840.11689748283973936No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4710.11375767441635792No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4700.11351615069148244No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4210.10168148817258318No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)