FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943322

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943322
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523445
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA63551.214072156578055No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43240.8260657757739591No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC34130.6520264784265778No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG31250.597006371251994No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA30020.5735082004795156No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA24500.46805299506156334No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT23000.4393966892414676No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19590.37425135401045No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16560.3163656162538567No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15520.2964972442185903No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14080.26898719063129845No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC14040.26822302247609586No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12390.23670108607399057No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11040.21091041083590445No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10990.20995520064190126No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10530.20116726685707192No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10480.20021205666306874No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC10150.19390766938264767No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9100.17384825530858064No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8870.16945428841616597No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8320.15894697628213086No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG8060.15397988327331427No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7410.14156215075127282No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7050.13468463735444985No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6550.12513253541441793No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6550.12513253541441793No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6280.11997440036680071No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5960.11386105512518029No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA5900.11271480289237648No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5730.1094670882327656No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5620.1073656258059586No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5440.10392686910754713No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)