FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943324

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943324
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495510
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14180.2861698048475308No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11660.23531311174345626No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8890.1794111117838187No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7860.15862444753889932No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7620.15378095295755886No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7580.1529737038606688No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7420.1497447074731085No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7030.1418740287784303No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6970.1406631551330952No Hit
ATGCGTATCAAACGTACCTCCAACCGTTCCA6920.13965409376198262No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC6810.13743415874553488No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6270.12653629593751892No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6200.1251236100179613No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5850.11806018042017316No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5340.10776775443482473No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)