FastQCFastQC Report
Wed 31 May 2023
EGAF00007943325

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943325
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477905
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT38830.8125045772695411No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC37400.7825823123842606No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT32050.6706353773239452No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA27300.5712432387189923No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA26740.5595254286939872No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA23660.4950774735564599No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT18280.3825027986733765No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT17580.3678555361421203No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA16670.34881409485148723No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC14440.30215210135905674No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT13630.2852031261443174No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT13610.28478463292913864No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC13430.28101819399252986No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT13000.27202058986618677No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10940.22891578870277562No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA9710.2031784559692826No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG9560.20003975685544198No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9500.19878427720990574No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8090.16928050553980395No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT8050.16844351910944644No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7930.16593255981837393No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7860.1644678335652483No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC7400.1548424896161371No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA7270.15212228371747522No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC7090.1483558447808665No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6320.13224385599648467No Hit
GTTCGGGCCACGGACGATGTAGTCTTCCGGGGCGTCATCGCCCA6030.12617570437639278No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5870.12282775865496282No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5660.11843357989558595No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC5510.11529488078174534No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5460.11424864774379846No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5310.11110994862995785No Hit
ACCCGGGTCACCCTTATCGCCTTTGTCGCCTTTCGCGCCTACCA5230.10943597576924284No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5020.10504179700986598No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4860.10169385128843597No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)