FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943327

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943327
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516436
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14630.28328776460200294No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13280.2571470617850034No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG13170.2550170785925071No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12870.24920803352206275No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12690.24572260647979616No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG12140.23507269051731483No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG11530.22326096554074465No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11350.21977553849847803No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10920.21144924056417444No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10240.1982820717378339No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG9650.18685761643262672No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9360.1812422061978638No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG9090.17601406563446392No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8970.17369044760628616No Hit
GGACTGGCCACGGTGGCCACCATCGTAGCGTTCCCAGCCGCTCG8640.16730049802879737No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG8000.15490786854518276No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7790.1508415369958717No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7480.14483885708974586No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG7210.13961071652634596No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG6920.13399530629158307No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6430.12450719934319063No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5610.10862914281730941No Hit
GACGCTACGGCGTTTGCTTGGCATCGGCATCTTACGTTCTTTGT5590.10824187314594645No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5510.10669279446049462No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)