FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943328

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943328
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516436
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26000.5034505727718439No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC15290.2960676637569805No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14840.28735409615131396No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14380.278446893709966No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC14120.27341238798224754No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13910.2693460564329365No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG13720.2656669945549884No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12770.24727168516524797No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11800.22848910610414455No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG11520.22306733070506318No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10630.20583383032941158No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10410.20157386394441906No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9630.18647034676126373No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC9460.1831785545546786No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG9300.18008039718377494No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9130.17678860497718982No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8950.1733031779349232No Hit
GGTTGGGGTCGTCGCTACGAACCAGCACCGA8740.16923684638561215No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8360.16187872262971598No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7840.1518097111742791No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG7820.15142244150291614No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG7660.14832428413201248No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6300.12198994647933142No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5610.10862914281730941No Hit
CCGTCCCAGACTACCGCAGCCGCGCCGAAAC5540.10727369896753906No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)