FastQCFastQC Report
Sun 21 May 2023
EGAF00007943331

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943331
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443414
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT28630.6456719905099975No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15220.3432458154230584No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10130.2284546721573969No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7280.16418065284361794No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7240.16327856134447716No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7190.1621509469705512No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6520.14704091435994354No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG6100.13756895361896557No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT6000.13531372487111368No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5640.12719490137884684No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5620.12674385562927648No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5430.12245892100835787No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5290.11930160076136521No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)