FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007943332

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943332
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443414
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT29200.6585267943727533No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15980.36038555390673277No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14230.3209190508193246No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11490.2591257831281827No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10940.2467220250149973No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7640.17229947633588474No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7360.16598483584189944No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6670.15042375748172138No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6550.1477174829842991No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6270.1414028424903138No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG6180.1393731366172471No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5750.12967565300148393No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5620.12674385562927648No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5590.12606728700492092No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5320.1199781693857208No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4500.10148529365333525No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)