FastQCFastQC Report
Wed 31 May 2023
EGAF00007943336

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943336
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436319
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16180.37082959944444316No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15640.35845333345556807No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13820.31674073327084085No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12550.2876335891858938No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10070.23079444168143032No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9660.22139764713432145No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9300.21314680314173806No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9030.20695867014730046No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8880.20352081848372408No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7310.1675379710716242No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7190.16478768974076305No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6710.15378656441731853No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6620.15172385341917266No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6110.14003515776301284No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5710.13086755332680905No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4870.1116155840107811No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4760.10909449279082506No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4550.10428150046181807No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)