FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943339

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943339
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454988
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA14260.31341485929299234No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG13020.2861613932675147No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12170.26747958187908255No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6510.14308069663375736No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6360.13978390638873991No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG5110.11231065434692783No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)