FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943341

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943341
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479491
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11450.23879488874660837No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA9300.19395567382912296No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6200.12930378255274863No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6130.1278439011368305No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5020.10469435297012875No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT4800.10010615423438605No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)