FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943342

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943342
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479491
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11410.23796067079465516No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG9600.2002123084687721No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8230.1716403436143744No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6240.13013800050470187No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5700.11887605815333344No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5660.11804184020138021No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5060.10552857092208197No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)