FastQCFastQC Report
Sun 21 May 2023
EGAF00007943343

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943343
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481126
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11470.23839908880418018No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA9680.2011946974389245No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7030.14611557055740076No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6100.1267859147084132No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT4990.10371503514671832No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4940.10267580633763296No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT4860.10101304024309642No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)