FastQCFastQC Report
Sun 21 May 2023
EGAF00007943344

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943344
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481126
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11480.23860693456599727No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG9850.20472807538981475No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8980.18664549411172957No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6090.12657806894659612No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5650.11743285542664499No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5530.11493870628484014No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5380.11182101985758408No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5010.10413072667035247No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)