FastQCFastQC Report
Wed 31 May 2023
EGAF00007943345

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943345
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500132
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA17310.3461086273223869No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG16650.3329121112026425No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG15860.31711628130173636No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT14310.28612446314173057No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT13360.2671294778178561No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCG12600.2519334895587565No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT11320.2263402461750098No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGG10590.21174409955771675No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA9830.19654811129861716No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCA9550.19094958930842257No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT9520.19034974766661603No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT8750.17495381219358092No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7920.15835819343693264No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7540.15076019930738285No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6600.1319651611974439No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA6540.13076547791383075No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC6410.12816616413266899No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6260.12516695592363616No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC6100.12196780050066783No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGT5920.11836875064982844No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT5730.11456975358505354No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5630.11257028144569833No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5580.11157054537602074No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG5490.10977102045060104No Hit
CACCAGCGGAACCAGGGACAGCTGCAGACGCGGAGGACCGG5460.10917117880879447No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT5270.10537218174401956No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5270.10537218174401956No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGT5030.10057344860956707No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5030.10057344860956707No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)