FastQCFastQC Report
Wed 31 May 2023
EGAF00007943346

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943346
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500132
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG38150.7627986211640128No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT21140.42268841025969145No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC14620.2923228267737317No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG14510.290123407420441No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAACGC12000.2399366567226252No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC11800.2359377124439148No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACCCG10680.21354362448313646No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTGGT9840.19674805851255267No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG9730.19454863915926196No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT8760.1751537594075164No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC8570.17135476234274152No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC8230.16455655706893382No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG7950.1589580350787392No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT7780.15555893244183536No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG7130.14256236353602647No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC6740.13476442219254117No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6660.133164844481057No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG6620.13236505562531492No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA6580.13156526676957284No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC6140.12276758935640991No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT6120.12236769492853887No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA6110.12216774771460334No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5690.11376996472931146No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT5620.11237033423176282No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC5620.11237033423176282No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC5600.11197043980389178No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA5560.1111706509481497No Hit
GTACACGGCCACACCCAGGGCCCGTGGGACCCG5430.10857133716698791No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5420.10837138995305239No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5400.10797149552518134No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC5360.10717170666943926No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5340.10677181224156823No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC5300.10597202338582615No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5090.1017731318931802No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5050.10097334303743812No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)