FastQCFastQC Report
Sun 21 May 2023
EGAF00007943347

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943347
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486355
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC17050.3505669726845617No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11510.2366584079530384No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10990.22596662931397846No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9820.2019101273760936No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT9180.1887510152049429No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8170.16798429130984568No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6260.12871256592406782No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5310.10917950879501599No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT5310.10917950879501599No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG5080.10445045285850871No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC5030.10342239722013755No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT4920.10116067481572102No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)