FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943348

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943348
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486355
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23300.47907392748095523No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG16030.32959463766179026No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT14810.30451008008553426No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT11630.23912574148512916No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG11340.23316301878257653No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9910.20376062752516166No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9540.19615301580121514No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8690.17867606994890564No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG8020.16490012439473223No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5440.11185245345478098No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC5430.11164684232710675No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC5310.10917950879501599No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC4910.1009550636880468No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)